If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ), 'gf_id' => 'HOM05D000694', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000694' ), 'data_identifier' => 'HOM05D000694', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000694', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p18760' => 'bna', 'A02p32250' => 'bna', 'A02p34670' => 'bna', 'A03p37700' => 'bna', 'A05p36890' => 'bna', 'A06p08780' => 'bna', 'A06p08790' => 'bna', 'A06p08800' => 'bna', 'A06p10900' => 'bna', 'A06p14320' => 'bna', 'A06p41810' => 'bna', 'A06p44190' => 'bna', 'A07p39430' => 'bna', 'A08p30460' => 'bna', 'A09p61740' => 'bna', 'A10p24730' => 'bna', 'Aa31LG1G1900' => 'aar', 'Aa31LG1G230' => 'aar', 'Aa31LG1G240' => 'aar', 'Aa31LG2G5870' => 'aar', 'Aa31LG2G8220' => 'aar', 'Aa31LG3G40' => 'aar', 'Aa31LG4G3750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.811' => 'aag', 'Actinidia02266' => 'ach', 'Actinidia06227' => 'ach', 'Actinidia10151' => 'ach', 'Actinidia12390' => 'ach', 'Actinidia17205' => 'ach', 'Actinidia17693' => 'ach', 'Actinidia19544' => 'ach', 'Actinidia22107' => 'ach', 'Actinidia30576' => 'ach', 'Actinidia36631' => 'ach', 'Actinidia38163' => 'ach', 'Ah.02g128770' => 'amhyb', 'Ah.03g136600' => 'amhyb', 'Ah.12g060000' => 'amhyb', 'AL1G24520' => 'aly', 'AL1G26880' => 'aly', 'AL1G30680' => 'aly', 'AL1G32060' => 'aly', 'AL2G33290' => 'aly', 'AL3G24270' => 'aly', 'AL5G10770' => 'aly', 'AL5G15530' => 'aly', 'Aqoxy2G00262' => 'aox', 'Aqoxy2G00395' => 'aox', 'Aqoxy5G03023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4I4T9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.85GS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HR44I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0Q4PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L47K0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L83YFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MYH50K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N28RR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ31ZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P712FB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWD870' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNL9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS1IVR' => 'arhy', 'AT1G12880' => 'ath', 'AT1G14860' => 'ath', 'AT1G18300' => 'ath', 'AT1G73540' => 'ath', 'AT2G01670' => 'ath', 'AT3G12600' => 'ath', 'AT3G26690' => 'ath', 'ATR0582G223' => 'atr', 'ATR0721G026' => 'atr', 'ATR0753G118' => 'atr', 'Atru.chr1.1440' => 'acertr', 'Atru.chr1.1987' => 'acertr', 'Atru.chr11.947' => 'acertr', 'Atru.chr12.1266' => 'acertr', 'Atru.chr12.1449' => 'acertr', 'Atru.chr6.2715' => 'acertr', 'AUR62017478' => 'cqu', 'AUR62018348' => 'cqu', 'AUR62026886' => 'cqu', 'AUR62030318' => 'cqu', 'AUR62032635' => 'cqu', 'AUR62037799' => 'cqu', 'BcaB02g06556' => 'bca', 'BcaB03g12973' => 'bca', 'BcaB03g15060' => 'bca', 'BcaB04g18706' => 'bca', 'BcaB04g21052' => 'bca', 'BcaB04g21059' => 'bca', 'BcaB06g25530' => 'bca', 'BcaB07g30219' => 'bca', 'BcaB07g30220' => 'bca', 'BcaB07g30380' => 'bca', 'BcaB07g31842' => 'bca', 'BcaB08g34422' => 'bca', 'BcaC01g04019' => 'bca', 'BcaC03g17065' => 'bca', 'BcaC03g17378' => 'bca', 'BcaC04g19109' => 'bca', 'BcaC05g25106' => 'bca', 'BcaC05g25145' => 'bca', 'BcaC05g25408' => 'bca', 'BcaC05g25414' => 'bca', 'BcaC05g25724' => 'bca', 'BcaC05g29256' => 'bca', 'BcaC06g31049' => 'bca', 'BcaC06g31285' => 'bca', 'BcaC06g34136' => 'bca', 'BcaC07g38897' => 'bca', 'BcaC07g41532' => 'bca', 'BcaC08g46773' => 'bca', 'BcaNung05440' => 'bca', 'BcaNung07393' => 'bca', 'BcaNung07399' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00130' => 'bna', 'BolC1t05196H' => 'bol', 'BolC2t09160H' => 'bol', 'BolC2t11064H' => 'bol', 'BolC2t11395H' => 'bol', 'BolC3t16850H' => 'bol', 'BolC5t29784H' => 'bol', 'BolC5t29785H' => 'bol', 'BolC5t30032H' => 'bol', 'BolC5t30038H' => 'bol', 'BolC5t30356H' => 'bol', 'BolC5t34200H' => 'bol', 'BolC6t39803H' => 'bol', 'BolC7t43767H' => 'bol', 'BolC7t44092H' => 'bol', 'BolC8t49483H' => 'bol', 'BolC8t52090H' => 'bol', 'BolC9t59200H' => 'bol', 'BraA01t04123Z' => 'bra', 'BraA02t06919Z' => 'bra', 'BraA02t08242Z' => 'bra', 'BraA02t08475Z' => 'bra', 'BraA03t12925Z' => 'bra', 'BraA05t22489Z' => 'bra', 'BraA06t24075Z' => 'bra', 'BraA06t24268Z' => 'bra', 'BraA06t24561Z' => 'bra', 'BraA06t27100Z' => 'bra', 'BraA06t27294Z' => 'bra', 'BraA07t31492Z' => 'bra', 'BraA08t34978Z' => 'bra', 'BraA09t41544Z' => 'bra', 'BraA10t44536Z' => 'bra', 'C01p52570' => 'bna', 'C02p31170' => 'bna', 'C02p49850' => 'bna', 'C02p53230' => 'bna', 'C03p45750' => 'bna', 'C05p10370' => 'bna', 'C05p10380' => 'bna', 'C05p12850' => 'bna', 'C05p12900' => 'bna', 'C05p16580' => 'bna', 'C05p55350' => 'bna', 'C06p47660' => 'bna', 'C07p32290' => 'bna', 'C07p35710' => 'bna', 'C08p18510' => 'bna', 'C08p45350' => 'bna', 'C09p63570' => 'bna', 'CAN.G121.10' => 'can', 'CAN.G128.70' => 'can', 'CAN.G1328.2' => 'can', 'CAN.G1905.2' => 'can', 'CAN.G222.53' => 'can', 'CAN.G316.7' => 'can', 'CAN.G423.38' => 'can', 'CAN.G525.9' => 'can', 'CAN.G643.13' => 'can', 'CAN.G843.34' => 'can', 'CANSAT01G0474' => 'cansat', 'CANSAT64G1325' => 'cansat', 'CANSAT64G1372' => 'cansat', 'CANSAT80G1833' => 'cansat', 'CARHR013210' => 'chi', 'CARHR015400' => 'chi', 'CARHR018860' => 'chi', 'CARHR018870' => 'chi', 'CARHR066540' => 'chi', 'CARHR087110' => 'chi', 'CARHR144240' => 'chi', 'CARHR147700' => 'chi', 'CARHR147710' => 'chi', 'Carub.0001s1265' => 'cru', 'Carub.0001s1465' => 'cru', 'Carub.0001s1792' => 'cru', 'Carub.0002s2028' => 'cru', 'Carub.0003s1195' => 'cru', 'Carub.0005s0062' => 'cru', 'Carub.0005s0469' => 'cru', 'Carub.0006s1170' => 'cru', 'Ca_02812_v3' => 'car', 'Ca_08223_v3' => 'car', 'Ca_12552_v3' => 'car', 'Ca_12557_v3' => 'car', 'Ca_17100_v3' => 'car', 'Ca_17176_v3' => 'car', 'Ca_17264_v3' => 'car', 'Ca_17285_v3' => 'car', 'Ca_18523_v3' => 'car', 'Ca_25354_v3' => 'car', 'CBR_g45972' => 'cbr', 'Cc04_g05980' => 'ccan', 'Cc07_g13310' => 'ccan', 'Cc11_g07040' => 'ccan', 'Cc11_g07050' => 'ccan', 'CDE02G1650' => 'cde', 'CDE04G1388' => 'cde', 'CDE05G0705' => 'cde', 'CDE05G1107' => 'cde', 'CDE05G1520' => 'cde', 'CDE05G1928' => 'cde', 'CDE05G3561' => 'cde', 'CDE06G2190' => 'cde', 'CDE07G0274' => 'cde', 'CDE08G0221' => 'cde', 'CDE09G1041' => 'cde', 'CDE11G0076' => 'cde', 'CDE11G0432' => 'cde', 'Cfa007796' => 'cfa', 'Cfa009461' => 'cfa', 'Cfa018019' => 'cfa', 'Cfa020629' => 'cfa', 'Cfa022589' => 'cfa', 'Ciclev10003280m.g' => 'ccl', 'Ciclev10005826m.g' => 'ccl', 'Ciclev10005935m.g' => 'ccl', 'Ciclev10012837m.g' => 'ccl', 'Ciclev10016278m.g' => 'ccl', 'Ciclev10016552m.g' => 'ccl', 'CiPaw.03G073100' => 'cil', 'CiPaw.04G047900' => 'cil', 'CiPaw.05G099600' => 'cil', 'CiPaw.05G189500' => 'cil', 'CiPaw.06G051200' => 'cil', 'CiPaw.06G110600' => 'cil', 'CiPaw.09G047700' => 'cil', 'CiPaw.09G064900' => 'cil', 'CiPaw.13G015000' => 'cil', 'CiPaw.15G146100' => 'cil', 'CiPaw.16G096900' => 'cil', 'ClCG01G006520' => 'cla', 'ClCG03G008810' => 'cla', 'ClCG05G012530' => 'cla', 'ClCG08G010740' => 'cla', 'COL.COLO4_13394' => 'col', 'COL.COLO4_16579' => 'col', 'COL.COLO4_20334' => 'col', 'COL.COLO4_20685' => 'col', 'COL.COLO4_28861' => 'col', 'Cpa.g.sc116.67' => 'cpa', 'Cpa.g.sc2.207' => 'cpa', 'Cpa.g.sc3.367' => 'cpa', 'Cpa.g.sc5.169' => 'cpa', 'Cpa.g.sc540.1' => 'cpa', 'Cpa.g.sc70.48' => 'cpa', 'Cre02.g106500' => 'cre', 'CsaV3_3G027850' => 'csa', 'CsaV3_5G023950' => 'csa', 'CsaV3_5G028120' => 'csa', 'CsaV3_6G035800' => 'csa', 'CSS0006071' => 'camsi', 'CSS0008608' => 'camsi', 'CSS0015340' => 'camsi', 'CSS0021705' => 'camsi', 'CSS0023143' => 'camsi', 'CSS0027565' => 'camsi', 'CSS0030737' => 'camsi', 'CSS0034817' => 'camsi', 'CSS0042662' => 'camsi', 'CSS0046524' => 'camsi', 'DCAR_003426' => 'dca', 'DCAR_013641' => 'dca', 'DCAR_013642' => 'dca', 'DCAR_014166' => 'dca', 'DCAR_014459' => 'dca', 'DCAR_020573' => 'dca', 'DCAR_023579' => 'dca', 'DCAR_026799' => 'dca', 'Dinv01103' => 'din', 'Dinv04586' => 'din', 'Dinv06188' => 'din', 'Dinv07736' => 'din', 'Dinv12043' => 'din', 'Dinv19043' => 'din', 'Dinv26265' => 'din', 'Dinv28186' => 'din', 'Dinv32017' => 'din', 'Dinv33267' => 'din', 'Duzib052G0670' => 'dzi', 'Duzib068G0144' => 'dzi', 'Duzib084G0017' => 'dzi', 'Duzib106G0277' => 'dzi', 'Duzib114G0433' => 'dzi', 'Duzib128G1463' => 'dzi', 'Duzib132G0427' => 'dzi', 'Duzib187G1067' => 'dzi', 'Duzib248G0338' => 'dzi', 'Duzib248G1666' => 'dzi', 'Duzib251G0714' => 'dzi', 'Duzib268G0606' => 'dzi', 'ECA232G1218' => 'eca', 'ECA233G0127' => 'eca', 'ECA238G3063' => 'eca', 'ECA238G3276' => 'eca', 'ECA248G3534' => 'eca', 'EL10Ac2g02774' => 'bvu', 'EL10Ac3g07238' => 'bvu', 'EL10Ac6g13891' => 'bvu', 'Eucgr.A02243' => 'egr', 'Eucgr.F02870' => 'egr', 'Eucgr.G01922' => 'egr', 'Eucgr.G02109' => 'egr', 'Eucgr.G03222' => 'egr', 'Eucgr.K02281' => 'egr', 'FAN01G1617' => 'fan', 'FAN02G2545' => 'fan', 'FAN03G3458' => 'fan', 'FAN05G4441' => 'fan', 'FAN06G2631' => 'fan', 'FAN07G1324' => 'fan', 'FAN08G2190' => 'fan', 'FAN09G3907' => 'fan', 'FAN10G2883' => 'fan', 'FAN12G3822' => 'fan', 'FAN12G4210' => 'fan', 'FAN13G2281' => 'fan', 'FAN14G4017' => 'fan', 'FAN17G0781' => 'fan', 'FAN17G1808' => 'fan', 'FAN18G2973' => 'fan', 'FAN19G0488' => 'fan', 'FAN22G2358' => 'fan', 'FAN23G2990' => 'fan', 'FAN26G1152' => 'fan', 'FvH4_1g30240' => 'fve', 'FvH4_4g22330' => 'fve', 'FvH4_4g33680' => 'fve', 'FvH4_5g17620' => 'fve', 'FvH4_6g54400' => 'fve', 'FvH4_7g03460' => 'fve', 'Glyma.02G067500' => 'gma', 'Glyma.02G084600' => 'gma', 'Glyma.02G244100' => 'gma', 'Glyma.04G135000' => 'gma', 'Glyma.05G238100' => 'gma', 'Glyma.05G247400' => 'gma', 'Glyma.07G104200' => 'gma', 'Glyma.07G168600' => 'gma', 'Glyma.08G045200' => 'gma', 'Glyma.08G055800' => 'gma', 'Glyma.09G173400' => 'gma', 'Glyma.11G155900' => 'gma', 'Glyma.11G215700' => 'gma', 'Glyma.13G195300' => 'gma', 'Glyma.14G213400' => 'gma', 'Glyma.15G233700' => 'gma', 'Glyma.16G046400' => 'gma', 'Glyma.16G148600' => 'gma', 'Glyma.18G040900' => 'gma', 'Glyma.19G031200' => 'gma', 'Glyma.19G031500' => 'gma', 'Gohir.A01G147400' => 'ghi', 'Gohir.A03G092000' => 'ghi', 'Gohir.A03G114700' => 'ghi', 'Gohir.A04G102200' => 'ghi', 'Gohir.A05G399800' => 'ghi', 'Gohir.A10G186800' => 'ghi', 'Gohir.A12G139900' => 'ghi', 'Gohir.A12G151700' => 'ghi', 'Gohir.A12G270400' => 'ghi', 'Gohir.D01G140400' => 'ghi', 'Gohir.D02G120600' => 'ghi', 'Gohir.D02G140400' => 'ghi', 'Gohir.D04G016000' => 'ghi', 'Gohir.D04G141300' => 'ghi', 'Gohir.D10G193700' => 'ghi', 'Gohir.D12G144400' => 'ghi', 'Gohir.D12G155400' => 'ghi', 'Gohir.D12G270800' => 'ghi', 'Gorai.002G172600' => 'gra', 'Gorai.005G133500' => 'gra', 'Gorai.005G156300' => 'gra', 'Gorai.008G155700' => 'gra', 'Gorai.008G167900' => 'gra', 'Gorai.008G291200' => 'gra', 'Gorai.011G216800' => 'gra', 'Gorai.012G018600' => 'gra', 'Gorai.012G126400' => 'gra', 'GSVIVG01001114001' => 'vvi', 'GSVIVG01008469001' => 'vvi', 'GSVIVG01011668001' => 'vvi', 'GSVIVG01030687001' => 'vvi', 'GSVIVG01032962001' => 'vvi', 'GSVIVG01033629001' => 'vvi', 'GSVIVG01036652001' => 'vvi', 'HanXRQChr01g0007971' => 'han', 'HanXRQChr06g0182681' => 'han', 'HanXRQChr07g0189161' => 'han', 'HanXRQChr07g0198001' => 'han', 'HanXRQChr09g0258921' => 'han', 'HanXRQChr12g0362631' => 'han', 'HanXRQChr14g0444801' => 'han', 'HanXRQChr14g0451531' => 'han', 'HanXRQChr15g0485881' => 'han', 'HanXRQChr15g0486651' => 'han', 'HanXRQChr15g0486681' => 'han', 'HanXRQChr16g0532791' => 'han', 'Haze_03008' => 'cav', 'Haze_10891' => 'cav', 'Haze_12518' => 'cav', 'Haze_14276' => 'cav', 'Haze_14964' => 'cav', 'Haze_18903' => 'cav', 'Hma1.2p1_0158F.1_g070080' => 'hma', 'Hma1.2p1_0320F.1_g123960' => 'hma', 'Hma1.2p1_0471F.1_g159540' => 'hma', 'Hma1.2p1_0738F.1_g210840' => 'hma', 'Hma1.2p1_0837F.1_g226070' => 'hma', 'Hma1.2p1_1583F.1_g292000' => 'hma', 'HPP92_000322' => 'vpl', 'HPP92_008007' => 'vpl', 'HPP92_009405' => 'vpl', 'HPP92_013219' => 'vpl', 'HPP92_013259' => 'vpl', 'HPP92_016585' => 'vpl', 'HPP92_017184' => 'vpl', 'HPP92_025309' => 'vpl', 'HPP92_027327' => 'vpl', 'Hund13375' => 'sun', 'Hund21966' => 'sun', 'Lalb_Chr01g0007341' => 'lal', 'Lalb_Chr03g0032091' => 'lal', 'Lalb_Chr05g0221541' => 'lal', 'Lalb_Chr05g0222261' => 'lal', 'Lalb_Chr09g0330941' => 'lal', 'Lalb_Chr10g0095781' => 'lal', 'Lalb_Chr10g0104291' => 'lal', 'Lalb_Chr14g0370681' => 'lal', 'Lalb_Chr15g0084941' => 'lal', 'Lalb_Chr16g0386921' => 'lal', 'Lalb_Chr17g0346061' => 'lal', 'Lalb_Chr18g0053491' => 'lal', 'Lalb_Chr22g0353461' => 'lal', 'Lalb_Chr24g0398131' => 'lal', 'Lj1A1092G18' => 'lonja', 'Lj1g0015617' => 'lja', 'Lj2A399T36' => 'lonja', 'Lj2g0001913' => 'lja', 'Lj2g0021914' => 'lja', 'Lj3g0017106' => 'lja', 'Lj3g0025717' => 'lja', 'Lj4g0026769' => 'lja', 'Lj5g0019409' => 'lja', 'Lj6C738T11' => 'lonja', 'Lj6g0001605' => 'lja', 'Lj7A618G63' => 'lonja', 'Lj9A417T35' => 'lonja', 'LjContig00141g0009578' => 'lja', 'Lsat_1_v5_gn_0_45961' => 'lsa', 'Lsat_1_v5_gn_2_68820' => 'lsa', 'Lsat_1_v5_gn_2_95261' => 'lsa', 'Lsat_1_v5_gn_3_64241' => 'lsa', 'Lsat_1_v5_gn_7_62380' => 'lsa', 'Lsat_1_v5_gn_8_46161' => 'lsa', 'Manes.01G119400' => 'mes', 'Manes.02G077800' => 'mes', 'Manes.04G094500' => 'mes', 'Manes.04G157800' => 'mes', 'Manes.06G003600' => 'mes', 'Manes.08G099900' => 'mes', 'Manes.09G173300' => 'mes', 'Manes.11G006900' => 'mes', 'Manes.11G074600' => 'mes', 'Manes.15G133600' => 'mes', 'Manes.17G083500' => 'mes', 'Mapoly0171s0023' => 'mpo', 'MBI07_g07562_MAGBIO' => 'mbi', 'MBI13_g06831_MAGBIO' => 'mbi', 'MBI13_g39658_MAGBIO' => 'mbi', 'MBI19_g38663_MAGBIO' => 'mbi', 'MCO01G661' => 'mco', 'MD02G1282400' => 'mdo', 'MD02G1282800' => 'mdo', 'MD06G1232000' => 'mdo', 'MD07G1048400' => 'mdo', 'MD09G1001600' => 'mdo', 'MD09G1270800' => 'mdo', 'MD13G1029200' => 'mdo', 'MD13G1132800' => 'mdo', 'MD14G1088400' => 'mdo', 'MD14G1238600' => 'mdo', 'MD16G1019500' => 'mdo', 'MD16G1143100' => 'mdo', 'MD17G1005200' => 'mdo', 'MD17G1269000' => 'mdo', 'Medtr1g032290' => 'mtr', 'Medtr1g078390' => 'mtr', 'Medtr3g065330' => 'mtr', 'Medtr5g078020' => 'mtr', 'Medtr6g070920' => 'mtr', 'Medtr7g084380' => 'mtr', 'Medtr8g039690' => 'mtr', 'Medtr8g105140' => 'mtr', 'Medtr8g107500' => 'mtr', 'MELO3C005275.2' => 'cme', 'MELO3C011387.2' => 'cme', 'MELO3C014764.2' => 'cme', 'MELO3C022834.2' => 'cme', 'MELO3C032977.2' => 'cme', 'Migut.D01197' => 'egut', 'Migut.E00471' => 'egut', 'Migut.I00592' => 'egut', 'Migut.J01658' => 'egut', 'Migut.K00135' => 'egut', 'Migut.K00917' => 'egut', 'Migut.L00623' => 'egut', 'MSTRG.11236' => 'ama', 'MSTRG.15662' => 'ama', 'MSTRG.19808' => 'ama', 'MSTRG.2136' => 'ama', 'MSTRG.22859' => 'ama', 'MSTRG.26158' => 'ama', 'MSTRG.4636' => 'ama', 'MSTRG.9365' => 'ama', 'Nitab4.5_0000198g0230' => 'nta', 'Nitab4.5_0000201g0020' => 'nta', 'Nitab4.5_0000201g0040' => 'nta', 'Nitab4.5_0000201g0060' => 'nta', 'Nitab4.5_0000574g0100' => 'nta', 'Nitab4.5_0000922g0040' => 'nta', 'Nitab4.5_0001052g0160' => 'nta', 'Nitab4.5_0001841g0110' => 'nta', 'Nitab4.5_0002036g0050' => 'nta', 'Nitab4.5_0002046g0140' => 'nta', 'Nitab4.5_0002450g0150' => 'nta', 'Nitab4.5_0003119g0010' => 'nta', 'Nitab4.5_0003377g0010' => 'nta', 'Nitab4.5_0003377g0020' => 'nta', 'Nitab4.5_0005497g0010' => 'nta', 'Nitab4.5_0006176g0020' => 'nta', 'Nitab4.5_0008972g0020' => 'nta', 'Nitab4.5_0012785g0020' => 'nta', 'Nn3g16241' => 'nnu', 'Nn3g18351' => 'nnu', 'Nn4g22096' => 'nnu', 'Nn4g24350' => 'nnu', 'Nn5g27889' => 'nnu', 'Nn7g36746' => 'nnu', 'Oeu006790.1' => 'oeu', 'Oeu008634.1' => 'oeu', 'Oeu011570.1' => 'oeu', 'Oeu013651.1' => 'oeu', 'Oeu015100.4' => 'oeu', 'Oeu018902.1' => 'oeu', 'Oeu023867.1' => 'oeu', 'Oeu025127.2' => 'oeu', 'Oeu028251.2' => 'oeu', 'Oeu032316.1' => 'oeu', 'Oeu035882.1' => 'oeu', 'Oeu046616.1' => 'oeu', 'Oeu053959.1' => 'oeu', 'Oeu057787.1' => 'oeu', 'Oeu059344.1' => 'oeu', 'Oeu061241.1' => 'oeu', 'Oeu062714.1' => 'oeu', 'Os02g0520100' => 'osa', 'Os02g0734300' => 'osa', 'Os03g0810300' => 'osa', 'Os04g0399300' => 'osa', 'Os06g0255400' => 'osa', 'Os07g0212300' => 'osa', 'Os11g0531700' => 'osa', 'Peaxi162Scf00076g00620' => 'pax', 'Peaxi162Scf00207g00135' => 'pax', 'Peaxi162Scf00314g00429' => 'pax', 'Peaxi162Scf00562g00411' => 'pax', 'Peaxi162Scf00571g00526' => 'pax', 'Peaxi162Scf00655g00215' => 'pax', 'Peaxi162Scf00696g00315' => 'pax', 'Peaxi162Scf01424g00013' => 'pax', 'PGR004G0422' => 'pgr', 'PGR031G1911' => 'pgr', 'PGR031G2677' => 'pgr', 'PGR042G0793' => 'pgr', 'PGR044G1917' => 'pgr', 'PGSC0003DMG400009728' => 'stu', 'PGSC0003DMG400014184' => 'stu', 'PGSC0003DMG400014455' => 'stu', 'PGSC0003DMG400016977' => 'stu', 'PGSC0003DMG400023569' => 'stu', 'PGSC0003DMG400023697' => 'stu', 'PGSC0003DMG400028802' => 'stu', 'PGSC0003DMG400029671' => 'stu', 'Phvul.001G099800' => 'pvu', 'Phvul.001G229700' => 'pvu', 'Phvul.002G320500' => 'pvu', 'Phvul.002G331500' => 'pvu', 'Phvul.003G019800' => 'pvu', 'Phvul.004G069000' => 'pvu', 'Phvul.004G148500' => 'pvu', 'Phvul.005G025200' => 'pvu', 'Phvul.008G237200' => 'pvu', 'Phvul.011G206450' => 'pvu', 'Potri.001G029500' => 'ptr', 'Potri.001G069200' => 'ptr', 'Potri.003G161100' => 'ptr', 'Potri.003G194900' => 'ptr', 'Potri.004G085600' => 'ptr', 'Potri.008G134000' => 'ptr', 'Potri.010G107300' => 'ptr', 'Potri.012G044300' => 'ptr', 'Potri.015G035000' => 'ptr', 'Potri.016G036700' => 'ptr', 'Potri.017G131000' => 'ptr', 'Pp3c11_17050' => 'ppa', 'Pp3c7_11490' => 'ppa', 'PRCOL_00006855' => 'pco', 'Prupe.1G212800' => 'ppe', 'Prupe.1G332500' => 'ppe', 'Prupe.2G040100' => 'ppe', 'Prupe.3G017600' => 'ppe', 'Prupe.3G314600' => 'ppe', 'Prupe.5G235900' => 'ppe', 'Prupe.7G038300' => 'ppe', 'Psat1g029680' => 'psa', 'Psat2g046320' => 'psa', 'Psat3g092880' => 'psa', 'Psat4g145720' => 'psa', 'Psat5g120880' => 'psa', 'Psat6g045680' => 'psa', 'Psat7g000880' => 'psa', 'Psat7g008280' => 'psa', 'Psat7g008320' => 'psa', 'Psat7g008720' => 'psa', 'Psat7g008760' => 'psa', 'Psat7g008800' => 'psa', 'PSO017G1828' => 'pso', 'PSO017G3039' => 'pso', 'PSO339G5871' => 'pso', 'PSO339G6558' => 'pso', 'PSO384G3178' => 'pso', 'PSO384G3498' => 'pso', 'PSO478G1334' => 'pso', 'PSO478G2202' => 'pso', 'QL02p059063' => 'qlo', 'QL02p068797' => 'qlo', 'QL03p035560' => 'qlo', 'QL03p048595' => 'qlo', 'QL04p017628' => 'qlo', 'QL04p017632' => 'qlo', 'QL04p017739' => 'qlo', 'QL07p010381' => 'qlo', 'QL10p031330' => 'qlo', 'RcHm_v2.0_Chr1g0325791' => 'rch', 'RcHm_v2.0_Chr2g0176631' => 'rch', 'RcHm_v2.0_Chr3g0491151' => 'rch', 'RcHm_v2.0_Chr4g0428561' => 'rch', 'RcHm_v2.0_Chr4g0443161' => 'rch', 'RcHm_v2.0_Chr7g0178041' => 'rch', 'Rhsim04G0111100' => 'rsi', 'Rhsim07G0067900' => 'rsi', 'Rhsim09G0090400' => 'rsi', 'Rhsim10G0178200' => 'rsi', 'Rhsim12G0016100' => 'rsi', 'Sabra01G0048500' => 'sbr', 'Sabra03G0117100' => 'sbr', 'Sabra03G0145500' => 'sbr', 'Sabra04G0056700' => 'sbr', 'Sabra08G0102500' => 'sbr', 'Sabra10G0078400' => 'sbr', 'Sabra15G0029100' => 'sbr', 'Sabra16G0038900' => 'sbr', 'Sabra17G0109100' => 'sbr', 'SalBow1G2663' => 'sbo', 'SalBow1G5973' => 'sbo', 'SalBow1G7645' => 'sbo', 'SalBow3G0784' => 'sbo', 'SalBow5G1451' => 'sbo', 'SalBow6G3443' => 'sbo', 'SalBow6G4949' => 'sbo', 'SalBow7G4782' => 'sbo', 'Sc10g0004480' => 'sci', 'Sc10g0009150' => 'sci', 'Sc13g0001130' => 'sci', 'Sed0002268' => 'sed', 'Sed0009532' => 'sed', 'Sed0010233' => 'sed', 'Sed0011053' => 'sed', 'Sed0012725' => 'sed', 'Sed0015589' => 'sed', 'Sed0023998' => 'sed', 'Sed0024110' => 'sed', 'Sed0024980' => 'sed', 'SEGI_11764' => 'sgi', 'SEGI_24633' => 'sgi', 'SEGI_29132' => 'sgi', 'SEGI_31065' => 'sgi', 'SGA_v2.0_scaffold105G30293' => 'sas', 'SGA_v2.0_scaffold115G32103' => 'sas', 'SGA_v2.0_scaffold143G35757' => 'sas', 'SGA_v2.0_scaffold232G43499' => 'sas', 'SGA_v2.0_scaffold40G15613' => 'sas', 'SGA_v2.0_scaffold40G15675' => 'sas', 'SGA_v2.0_scaffold43G16295' => 'sas', 'SGA_v2.0_scaffold45G17161' => 'sas', 'SGA_v2.0_scaffold74G24653' => 'sas', 'SHI24517' => 'shi', 'SMO115G0140' => 'smo', 'SMO145G0058' => 'smo', 'SMO367G0164' => 'smo', 'Solyc01g005390.3' => 'sly', 'Solyc03g058460.1' => 'sly', 'Solyc03g118470.4' => 'sly', 'Solyc04g014500.3' => 'sly', 'Solyc06g068900.4' => 'sly', 'Solyc10g080760.2' => 'sly', 'Solyc11g011360.2' => 'sly', 'Solyc12g040870.3' => 'sly', 'Sopen03g012110' => 'spe', 'Sopen03g037350' => 'spe', 'Sopen04g006630' => 'spe', 'Sopen06g026190' => 'spe', 'Sopen10g031300' => 'spe', 'Sopen11g006150' => 'spe', 'Sopen12g020630' => 'spe', 'Sp1g11450' => 'spa', 'Sp1g13300' => 'spa', 'Sp1g16270' => 'spa', 'Sp2g13130' => 'spa', 'Sp2g15810' => 'spa', 'Sp3g10740' => 'spa', 'Sp5g28700' => 'spa', 'TAR362G0661' => 'tar', 'TAR369G0273' => 'tar', 'TAR369G0372' => 'tar', 'TAR371G0524' => 'tar', 'TAR371G0858' => 'tar', 'TAR374G0014' => 'tar', 'TAR622G0044' => 'tar', 'TAR622G0414' => 'tar', 'TAR623G1302' => 'tar', 'TAR629G0019' => 'tar', 'TAR629G0509' => 'tar', 'TAR633G0266' => 'tar', 'THA.LOC104798715' => 'tha', 'THA.LOC104805085' => 'tha', 'THA.LOC104805294' => 'tha', 'THA.LOC104809821' => 'tha', 'THA.LOC104812174' => 'tha', 'THA.LOC104819138' => 'tha', 'THA.LOC104824131' => 'tha', 'THA.LOC104825953' => 'tha', 'THA.LOC104826734' => 'tha', 'Thecc.02G189800' => 'tca', 'Thecc.02G291800' => 'tca', 'Thecc.03G060600' => 'tca', 'Thecc.04G050100' => 'tca', 'Thecc.04G054900' => 'tca', 'Thecc.10G149800' => 'tca', 'Thhalv10004929m.g' => 'esa', 'Thhalv10004986m.g' => 'esa', 'Thhalv10008778m.g' => 'esa', 'Thhalv10008801m.g' => 'esa', 'Thhalv10008895m.g' => 'esa', 'Thhalv10019174m.g' => 'esa', 'Thhalv10021582m.g' => 'esa', 'TPR.G22513' => 'tpr', 'TPR.G24894' => 'tpr', 'TPR.G27735' => 'tpr', 'TPR.G30758' => 'tpr', 'TPR.G35152' => 'tpr', 'TPR.G36600' => 'tpr', 'TPR.G39569' => 'tpr', 'TPR.G40316' => 'tpr', 'TPR.G7223' => 'tpr', 'TPR.G8260' => 'tpr', 'TWI15G0865' => 'twi', 'TWI18G1408' => 'twi', 'TWI53G0295' => 'twi', 'TWI53G2087' => 'twi', 'TWI60G0861' => 'twi', 'TWI63G0353' => 'twi', 'TWI74G0700' => 'twi', 'TWI74G1655' => 'twi', 'TWI81G0169' => 'twi', 'unitig_0.g607' => 'ugi', 'unitig_21.g20332' => 'ugi', 'unitig_27.g25309' => 'ugi', 'unitig_32.g11794' => 'ugi', 'unitig_60.g25476' => 'ugi', 'unitig_61.g26211' => 'ugi', 'unitig_62.g23817' => 'ugi', 'unitig_744.g24458' => 'ugi', 'vmacro01009' => 'vma', 'vmacro07708' => 'vma', 'vmacro11453' => 'vma', 'vmacro13760' => 'vma', 'vmacro16758' => 'vma', 'vmacro22451' => 'vma', 'vmacro23118' => 'vma', 'VMungo0251G1229' => 'vmu', 'VMungo0464G0887' => 'vmu', 'VMungo0464G1845' => 'vmu', 'VMungo0647G0114' => 'vmu', 'VMungo1080G1415' => 'vmu', 'VMungo1127G0825' => 'vmu', 'VMungo1383G2136' => 'vmu', 'VMungo1383G3540' => 'vmu', 'Zm00001eb062040' => 'zma', 'Zm00001eb122150' => 'zma', 'Zm00001eb180720' => 'zma', 'Zm00001eb190280' => 'zma', 'Zm00001eb198000' => 'zma', 'Zm00001eb212330' => 'zma', 'Zm00001eb242120' => 'zma', 'Zm00001eb253740' => 'zma', 'Zm00001eb303360' => 'zma', 'Zm00001eb364630' => 'zma', 'Zm00001eb379920' => 'zma', 'Zm00001eb421520' => 'zma' ) $gf_id = 'HOM05D000694' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000694' ) $data_identifier = 'HOM05D000694' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 34, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421520' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1